Solved!
ncgentab.c \
ncgentab.h: ncgen.y ncgenyy.c ncgen.h
$(yacc) -d $(srcdir)/ncgen.y; \
mv ncgen.tab.c /*(used to be y.tab.c)*/ ncgentab.c; \
mv ncgen.tab.h /*(used to be y.tab.c)*/ ncgentab.h
Changing to this solves the problem in the utils/ncgen/Makefile
Cihan
On Tue, 2010-01-12 at 13:30 -0500, Cihan Aydin wrote:
> It does not resolve, even playing with the Makefile a bit...
>
> On Tue, 2010-01-12 at 13:16 -0500, Jason Swails wrote:
> > Then perhaps try installing byacc? I had this problem and installed
> > both bison and byacc (perhaps redundant, but they're small packages),
> > and this error was resolved.
> >
> > On Tue, Jan 12, 2010 at 1:13 PM, Cihan Aydin <cihan.aydin.umassmed.edu> wrote:
> > > Bison is present and i directed yacc to bison on the makefile for
> > > ncgen...
> > >
> > > On Tue, 2010-01-12 at 13:08 -0500, Jason Swails wrote:
> > >> Hello,
> > >>
> > >> Install the packages bison or byacc to your system. If you are using
> > >> Ubuntu, a simple "apt-get install byacc" or "apt-get install bison"
> > >> should fix the problem.
> > >>
> > >> Good luck!
> > >> Jason
> > >>
> > >> On Tue, Jan 12, 2010 at 1:01 PM, Cihan Aydin <cihan.aydin.umassmed.edu> wrote:
> > >> > Greetings community,
> > >> >
> > >> > I was trying to compile parallel AT 1.3 w/intel compilers and bintraj
> > >> > support but I got the following error...
> > >> >
> > >> > cd ncgen && make
> > >> > make[6]: Entering directory
> > >> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
> > >> > mpicc -o ncmpigen -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE main.o
> > >> > load.o ncgentab.o escapes.o getfill.o init.o genlib.o -L../../../src/lib
> > >> > -lpnetcdf
> > >> > /home/aydinc/MicroEnv/intel-11.1.064/lib/intel64/libimf.so: warning:
> > >> > warning: feupdateenv is not implemented and will always fail
> > >> > main.o: In function `main':
> > >> > main.c:(.text+0x54b): undefined reference to `yyin'
> > >> > main.c:(.text+0x550): undefined reference to `yyparse'
> > >> > init.o: In function `init_netcdf':
> > >> > init.c:(.text+0x2): undefined reference to `clearout'
> > >> > make[6]: *** [ncmpigen] Error 1
> > >> > make[6]: Leaving directory
> > >> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils/ncgen'
> > >> > make[5]: *** [ncmpigen] Error 2
> > >> > make[5]: Leaving directory
> > >> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src/utils'
> > >> > make[4]: *** [all] Error 2
> > >> > make[4]: Leaving directory
> > >> > `/home/aydinc/MicroEnv/amber-11/src/pnetcdf/src'
> > >> > make[3]: *** [subdir_target] Error 1
> > >> > make[3]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
> > >> > make[2]: *** [src/lib/all] Error 2
> > >> > make[2]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/pnetcdf'
> > >> > make[1]: *** [../pnetcdf/lib/libpnetcdf.a] Error 2
> > >> > make[1]: Leaving directory `/home/aydinc/MicroEnv/amber-11/src/ptraj'
> > >> > make: *** [parallel] Error 2
> > >> >
> > >> > Following this error, I made the compilation without bintraj support and
> > >> > everything was OK.
> > >> >
> > >> > What may be the cause of the problem, in case I would like to use binary
> > >> > trajectories?
> > >> >
> > >> > Thank you,
> > >> >
> > >> > Cihan
> > >> >
> > >> >
> > >> > _______________________________________________
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> > >> >
> > >>
> > >>
> > >>
> > >
> > >
> > >
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> >
> >
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Received on Tue Jan 12 2010 - 11:00:03 PST
