On Sat, Jan 09, 2010, qiaoyan wrote:
> I want to use mmtsb to do cluster analysis, I did this according to the tutorial B3-section 6, but when I start to do cluster using "kclust -mode rmsd -centroid -cdist -heavy -lsqfit \
> -radius 6 -maxerr 1 -iterate \
> ../clustfils > ../Centroid_6
The Amber mailing list is not a very good place to post questions about mmtsb,
since I don't think many people here use it. There is a "forum" tab at
http://feig.bch.msu.edu/mmtsb/Main_Page which looks like a good place to ask.
I don't see any "kclust" command at the mmtsb web site documentation page; as
a guess, most commands end in ".pl", so it may be you need to replace "kclust"
with "kclust.pl". Do the other mmtsb clutering commands work for you?
...dac
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Received on Sat Jan 09 2010 - 06:30:04 PST
