On Sat, Jan 09, 2010, Xihui Yin wrote:
>
> I want to simulate the interaction of two molecules which come from one PDB
> file, but I don't how to add two residues into one unit. I thought maybe I
> should use the command "add" , however, it doesn't work.
My suggestion: just edit the pdb file to have two copies of your molecule,
with a TER card in between. Translate the coordinates of one of the molecules
away from the other. Then the "loadpdb" command will give you what you want.
[Note that you may also need to use something like antechamber to create
a topology library and parameters for C6.]
....dac
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Received on Sat Jan 09 2010 - 06:30:03 PST
