[AMBER] Installation of Amber11 under Cygwin on WindowXP

From: Lixia Jin Day <ljin12.asu.edu>
Date: Mon, 4 Jan 2010 13:20:38 -0700

Hi,
I am trying to install amertools on my computer under cygwin.
As I ran ./configure gnu, I got the message. It looks I can continue, but
want to know what the error message mean and how they matter for my future
applications. Thank you!

Lixia

Setting AMBERHOME to /cygdrive/d/amber11

Could not find the X11 libraries; you may need to edit config.h
   to set the XHOME and XLIBS variables.
Warning: the X11 libraries are not in the usual location !
    To search for them try the command: locate libXt
    On new Fedora OS's install the libXt-devel libXext-devel
    libX11-devel libICE-devel libSM-devel packages.
    On old Fedora OS's install the xorg-x11-devel package.
    On RedHat OS's install the XFree86-devel package.
    On Ubuntu OS's install the xorg-dev package.
    For the moment Amber will be configured not to build XLEaP.

Obtaining the gnu suite version:
      gcc -v
The version is 3.4.4

Testing the gcc compiler:
     gcc -DUSE_AMBER_C9XCOMPLEX -DSYSV -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -o testp testp.c
OK

Validating the C++ compiler version:
     g++ -v
The version is 3.4.4
OK

Testing the gfortran compiler:
     gfortran -O0 -o testp testp.f
Unable to compile a Fortran program using gfortran -O0
We will be unable to compile sqm

Testing flex:
OK

Configuring NetCDF; (may be time-consuming)

    Error: NetCDF configure returned 1
    NetCDF configure failed! Check the netcdf_config.log file.
    Continuing but NetCDF will be skipped.

The configuration file, config.h, was successfully created.

The next step is to type 'make -f Makefile_at'
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Received on Mon Jan 04 2010 - 12:30:03 PST
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