What we are trying to do is to input a nucleotide sequence and predict the
3D RNA structure for it. Since it is not an exact science, we want to
compare the results from different programs. So, for example, we would get
a prediction from both AMBER and MCSYM and compare the results. After that,
we would like to do MD simulations on that RNA structure. Hopefully, that
helps in describing what I am looking for.
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Received on Mon Dec 14 2009 - 14:00:03 PST
