Re: [AMBER] vertex atom mismatch

From: Guillermo Mulliert Carlín <>
Date: Fri, 31 Jul 2009 15:33:46 +0100


On Fri, 31 Jul 2009, Clark, Tiffany D wrote:

|> Hello AMBER Gurus ,
|> I am attempting an mm_pbsa analysis and have come upon the 'vertex atom
|> mismatch' problem. I noticed that several other people have run into this
|> same problem though I have yet to find a solution. I tried changing the box
|> parameters though this has not yielded any success as the problem persists.
|> Following the vertex atom mismatch I have "No skew or curtosis when zero
|> variance in moment" which has been repeated ~25 times.
|> Thank you for any suggestions which you are willing to offer.

         somewhere in the "Amber Mailing List Archive" I found that vertex atom
mismatch was an error from molsurf. Try to put MS to 0 in your script. Hope
this help


                                                 Guillermo Mulliert

AMBER mailing list
Received on Wed Aug 19 2009 - 19:57:19 PDT
Custom Search