[AMBER] What is the meaning of "rms first *"

From: Catein Catherine <askamber23.hotmail.com>
Date: Fri, 31 Jul 2009 04:49:17 +0100


Dear Sir/Madam,

 

Should we expect the rotation and translation motion of whole system removed by "rms first *" command in PCA analysis? What is the * stands for?

 

If not, what should we do to remove the rotation and translation motion of the system before doing PCA analysis?

 

Best regards and many thanks in advanced,

 

Cat

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Received on Wed Aug 19 2009 - 19:53:32 PDT
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