Hi there,
I am doing this:
tar xvfj AmberTools-1.2.tar.bz2
cd $AMBERHOME
wget -c
http://ambermd.org/bugfixes/AmberTools/1.2/bugfix.all
mv -f bugfix.all bugfixAmberTools.all
patch -p0 -N < bugfixAmberTools.all
patching file test/antechamber/charmm/ala2.prm.save
patching file src/nab/sff2.c
patching file src/ptraj/ptraj.c
patching file src/ptraj/io.c
patching file src/ptraj/ptraj.c
patching file src/ptraj/trajectory.h
patching file src/leap/src/leap/pdb_format.c
patching file dat/leap/parm/gaff.dat
patching file src/ptraj/ptraj.c
patching file src/ptraj/ptraj.c
Hunk #2 succeeded at 3386 (offset 7 lines).
Hunk #3 succeeded at 3450 (offset 7 lines).
Hunk #4 succeeded at 3546 (offset 7 lines).
Hunk #5 succeeded at 3583 (offset 7 lines).
Hunk #6 succeeded at 3598 (offset 7 lines).
Hunk #7 succeeded at 3810 (offset 7 lines).
Hunk #8 succeeded at 3884 (offset 7 lines).
Hunk #9 succeeded at 4094 (offset 7 lines).
Hunk #10 succeeded at 4144 (offset 7 lines).
Hunk #11 succeeded at 4169 (offset 7 lines).
Hunk #12 succeeded at 4226 (offset 7 lines).
Hunk #13 succeeded at 4360 (offset 7 lines).
Hunk #14 succeeded at 5397 (offset 7 lines).
Hunk #15 succeeded at 5577 (offset 7 lines).
Hunk #16 succeeded at 6045 (offset 7 lines).
patching file src/ptraj/trajectory.h
patching file src/ptraj/ptraj.c
patching file src/nab/prm.c
can't find file to patch at input line 1531
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|
|********> bugfix.10
|Author: Dave Case
|Date: 07/17/2009
|
|Programs: tleap
|
|Description: fix up the residue numbers in loadMol2 if the input mol2 file
| has residue numbers outside the range 1 to number of
| substructures
| phase angles (as in parmbsc0). Check for that. Note that this
| effectively undoes bugfix.2
|
|Usage: Use this patch to update amber10/src/leap/src/leap/tripos.c
|
|------------------------------------------------------------------------------
|--- tripos.c 15 Apr 2008 23:22:21 -0000 10.0
|+++ tripos.c 7 Jul 2009 20:04:46 -0000
--------------------------
File to patch: ^C
What am I doing wrong?
Many thanks in advance.
Alan
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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Received on Mon Jul 20 2009 - 10:07:07 PDT
