> can anybody please help me to build entangle-less polymer like dendrimer. I=
> am using my own residues but when I sequence them they get entangled.
The 'sequence' cmd in leap does not avoid steric overlap.
You may be best off with loading from a pdb with a conformation
that you have prepared in the molecular editor of your choice.
Or clean it up in xleap. Minimization may help (leap's minimization
doesn't know about vdw, btw).
Bill
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Received on Mon Jul 06 2009 - 08:38:11 PDT
