Dear Amber Users,
I am relatively new to Amber and have some doubt.
I am trying to do FEP calculations to study the effect of mutation on
binding affinity of the ligand. I have parameterized the ligand using
antechamber with GAFF. Which version of amber force field would be best
choice for me. I am more inclined towards ff03 but I am not sure and
therefore looking for some expert advise.
Thanks!
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Received on Mon Jun 01 2009 - 01:11:52 PDT
