[AMBER] how to use two dimensions periodic boundary ?

From: Nancy <nancy4619.163.com>
Date: Thu, 21 May 2009 02:32:50 +0100

Dear all,
  I put a layer of water in the nozzle of carbon nanotube,because of three dimensions periodic boundary , water molecules enter carbon nanotube ,and they come out,then they re-enter the initial nozzle.In deed,I don't want such result , can i use two dimensions periodic boundary condition which are in X and Y directions, not Z derection to keep water from re-entering the initial nozzle,if so ,how should i do? can anybody give me some advice ? Thanks in advance.
Nancy

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Received on Thu May 21 2009 - 08:33:53 PDT
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