Thanks a lot for the mail. I have already renamed the atoms in the pdb file
1QF6_TSB.pdb according to the atom names in TSB.in. The previous error showed
after these modifications. I am attaching the pdb and prepi files.
It would be great if you please suggest what might be the problem.
Sincere Regards
Moitrayee
> On Tue, May 19, 2009, moitrayee.mbu.iisc.ernet.in wrote:
>
>> Loading Prep file: ./TSB.in
>> Loading PDB file: ./1QF6_TSB.pdb
>> Added missing heavy atom: .R<TSB 644>.A<O3 16>
>> Added missing heavy atom: .R<TSB 644>.A<P1 17>
>
> It looks like the atom names in the TSB.in file do not match the atom names in
> the PDB file for residue TSB. You will have to modify one or the other of
> these files to make them consistent.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
> --
> This message has been scanned for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
>
>
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
- application/octet-stream attachment: TSB.in
Received on Wed May 20 2009 - 17:29:06 PDT
