> But after minimization, when I visualised the correspondin pdb i find that
> all atoms in part2 has moved as well.
How much do the atom move? Is it really a lot? Notice that you are not
freezing the atoms, but only restraining them, which only applies a
penalty to moving them: depending on the initial structure, they might
still move. If you really want to freeze those atoms, *maybe* you
could use ibelly, but I'm not sure it works with minimization.
Gustavo.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Wed Jul 02 2008 - 06:07:21 PDT
