On Tue, Jun 24, 2008, Rilei Yu wrote:
>
> I came across a problem: when I transform the mol2 format file to the pdb
> format file in sybyl, the type of a "N" atom also change from the Nam
> to the N2 (The only one N atom in the ligand molecule). Then I try to
> change the type of the N in the Sybyl to obtain the original type (Nam),
> unfortunately, I failed.
You don't say exactly *how* you tried to transform the mol2 file to pdb. If I
read your email correctly, you tried to do this "in sybyl". Someone here may
be able to help, but this doesn't (on its face) look like a question that has
anything to do with Amber(?)
If I am misunderstanding your question, you will probably need to be more
explicit about exactly what you tried to do, and what happened.
...dac
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Received on Wed Jun 25 2008 - 06:07:37 PDT
