at 4:10 PM
Subject: Installation Problem of AMBER10
To: majordomo.scripps.edu
I am trying to install AMBER10 on my Sun Ultra 40 workstation with
Solaris10.
with ./configure_amber -help i get the following message.
==================================================================
# ./configure_amber -help
Usage: ./configure [flags] [compiler/architecture]
where <compiler/architecture> is one of:
compaqf90, hpf90, ifort, pgf90, sgi_altix, sgi_mips,
sparc, xlf90_aix, xlf90_suse, xlf90_macosx, xlf90_bluegene,
ifort_macosx, g95, gfortran, pathscale
Parallel option flags:
-mpi Use native MPI (assumes that the proper path will be searched)
-mpi2 Like -mpi, but assumes mpi2 compatibility
-nopar Explicit request of no MPI, the default
-lamsource Use LAM/MPI (compile from source code)
-lam Use (existing) LAM/MPI (MPI_HOME must be set)
-mpich Use MPICH (MPI_HOME must be set)
-mpich2 Use MPICH2 (MPI_HOME must be set)
-openmpi Use OpenMPI (MPI_HOME must be set)
-intelmpi Use Intel MPI (MPI_HOME must be set,
e.g. to /opt/intel/mpi/2.0)
-scali Use scali MPI (MPI_HOME must be set, e.g. to /opt/scali)
Platform option flags:
-gnucompat Add a second underscore to some symbols to maintain
GNU link compatibility (g95, gfortran, pgf90).
-p4 Optimize for Pentium 4 processor (pgf90,g95,
gfortran, pathscale). Adds SSE1, SSE2 vectorisation
where available.
-cygwin Add CygWin flags for Windows (g95, gfortran).
General flags:
-mmtsb Request building sander for MMTSB.
-static Static linking, i.e., prevent linking with shared libraries.
-verbose Add verbose compiler comment and warning flags.
-nobintraj Do not include support for binary (netCDF) trajectory files
-nolfs Remove compile flags for Large File Support
-nosanderidc Do not include support for IDC>0 in Sander.
Environment variables:
MKL_HOME Root directory of the Intel Math Kernel Library
for example, /opt/intel/mkl/8.0.
The MKL helps some with performance, but it is generally
not a big deal if you leave this variable empty.
GOTO Location for the "Goto" optimized blas library; this is
used if MKL_HOME is *not* defined.
========================================================================
Can anyone tell me which flag and compiler I shuold use for my system for my
system.
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Received on Sun Jun 22 2008 - 06:07:30 PDT
