Thanks for your informatiopn.
I will try to construct the starting figure than.
Vijay.
--- "M. L. Dodson" <mldodson.houston.rr.com> wrote:
> Vijay Manickam Achari wrote:
> > Dear amber users,
> >
> > I have built bilayer system. Now I want to solvate
> the
> > bilayers with water. I want to put a layer of
> water
> > molecules, say 250 water molecules on top and
> bottom
> > of the bilayer.
> >
> > How am I suppose to put the water molecules?
> > Is there any command available in Amber so that I
> can
> > put only on top and bottom of my bilayer.
> >
> > If I use solvatebox, it puts all around my bilayer
> > system which I dont want like that.
> >
> > Can anyone help me??
> >
> > Thank you
> > Vijay Achari
> >
>
> Packmol
> (http://www.ime.unicamp.br/~martinez/packmol/) was
> written
> to generate starting configurations for molecular
> dynamics. IIRC
> one of the examples on the web site does what you
> want (differing
> only in the details).
>
> Bud Dodson
>
> --
> M. L. Dodson
> Email: mldodson-at-houston-dot-rr-dot-com
> Phone: eight_three_two-five_63-386_one
>
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Received on Wed Jul 11 2007 - 06:07:56 PDT
