Will you please tell me the process to add the lipid
bilayer to a membrane protein? I will run this kind of
MD soon.
I am looking forward to getting your reply.
Best regards.
Fenghui Fan
--- Vijay Manickam Achari <vjrajamany.yahoo.com>
wrote:
> Dear amber users,
>
> I have built bilayer system. Now I want to solvate
> the
> bilayers with water. I want to put a layer of water
> molecules, say 250 water molecules on top and bottom
> of the bilayer.
>
> How am I suppose to put the water molecules?
> Is there any command available in Amber so that I
> can
> put only on top and bottom of my bilayer.
>
> If I use solvatebox, it puts all around my bilayer
> system which I dont want like that.
>
> Can anyone help me??
>
> Thank you
> Vijay Achari
>
>
>
>
___________________________________________________________
>
> Check out the All New Yahoo! Mail blog
> http://ymailuk.com/
>
-----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to
> majordomo.scripps.edu
>
____________________________________________________________________________________
Need a vacation? Get great deals
to amazing places on Yahoo! Travel.
http://travel.yahoo.com/
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jul 11 2007 - 06:07:36 PDT
