RE: AMBER: antechamber question

From: Junmei Wang <>
Date: Tue, 22 May 2007 10:08:18 -0500

This is not an error or warning, it is just for information purpose.

All the best


From: [] On Behalf
Of Yao Xin
Sent: Tuesday, May 22, 2007 8:40 AM
Subject: AMBER: antechamber question

Dear Amber Team,

I am making a .off file for a modified nucleotide.

>antechamber -i odup.log -fi gout -o -fo ac

it said:
"Bond types are assigned for valence state 4 with penalty of
Could you tell me what does this message mean? Do I need
to fix some error? Thank you for your help.

Best Wishes,
Yao Xin

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Received on Wed May 23 2007 - 06:07:39 PDT
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