AMBER: antechamber question

From: Yao Xin <yxin2.student.gsu.edu>
Date: Tue, 22 May 2007 09:39:41 -0400

Dear Amber Team,

I am making a .off file for a modified nucleotide.

>antechamber -i odup.log -fi gout -o OdU_gaff.ac -fo ac

it said:
"Bond types are assigned for valence state 4 with penalty of
2."
Could you tell me what does this message mean? Do I need
to fix some error? Thank you for your help.

Best Wishes,
Yao Xin


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Received on Wed May 23 2007 - 06:07:39 PDT
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