RE: AMBER: compiling parallel amber 9 in linux

From: Amber admin <>
Date: Thu, 24 Aug 2006 17:10:57 -0700


Someone from our group just ran into this problem. It seems that there
are some old *.a, *.o files in lmod subdirectory. Not sure if there are
in the original distribution or not.


#cd $AMBERHOME/src
#make clean
#find . -name '*.[ao]'

You should remove any *.a, *.o files remaining manually.

It built fine after that.


-----Original Message-----
From: [] On Behalf
Of Amber admin
Sent: Wednesday, August 23, 2006 12:00 PM
Subject: AMBER: compiling parallel amber 9 in linux

Hi, I ran into a problem with the parallel installation. I am using a
downloaded binary copy of g95. Here is part of my cshrc file:

### amber 9 ###
setenv AMBERHOME ~/amber9
set path = ( $path $AMBERHOME/exe )
setenv MPI_HOME /opt/lam/intel
setenv LD_LIBRARY_PATH ${MY_LD_PATH}:${MPI_HOME}/lib:${MPI_HOME}/include

I got the following error message after typing ./configure -lam

        ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \
        ../lib/nxtsec.o ../lib/sys.a -L/opt/lam/intel/lib
-L/opt/lam/intel/lib -llammpio -llamf77mpi -lmpi -llam -lutil -ldl
../lmod/lmod.a(xmin.o)(.text+0x7): In function `xmin_':
: undefined reference to `_g95_get_ioparm'
../lmod/lmod.a(xmin.o)(.text+0xc): In function `xmin_':

Do I need to recompile g95 with the intel compilers on this machine?

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Received on Sun Aug 27 2006 - 06:07:18 PDT
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