Amber Archive Jul 2006 by messages with attachments

383 messages: Starting Sun Jul 02 2006 - 06:07:20 PDT, Ending Wed Aug 02 2006 - 06:07:09 PDT
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Re: AMBER: tleap BUG to write a pdb file if atom name contains 4 chars. Christophe Guilbert (Wed Jul 05 2006 - 16:55:49 PDT)
1. liga_leap.pdb (6173 bytes)
2. liga_regul.pdb (7107 bytes)
AMBER: Problem with bcc flag of antechamber Gobind Bisht (Thu Jul 06 2006 - 10:00:49 PDT)
1. installation_error_with_AMBER9.sxw (12931 bytes)
AMBER: amber9 compilation problems on EM64T xeon system hayden (Thu Jul 06 2006 - 11:11:04 PDT)
1. compile_errors_for_parallel (5295 bytes)
AMBER: Why "ho" and "hw" VDW's radius are set to 0 in "gaff.dat" ? Christophe Guilbert (Thu Jul 06 2006 - 17:51:49 PDT)
1. liga_mini.pdb (7291 bytes)
2. rece_regul.pdb (65898 bytes)
Re: AMBER: script to extract data from minimization .out file Gustavo Seabra (Fri Jul 07 2006 - 10:35:32 PDT)
1. test.awk (56 bytes)
AMBER: small bug in ambmask (amber9) Kateryna Miroshnychenko (Mon Jul 10 2006 - 07:53:02 PDT)
1. ambmask.bugfix (772 bytes)
AMBER: QMMM simulation amit.mbu.iisc.ernet.in (Thu Jul 13 2006 - 11:38:48 PDT)
1. 1mod.md.in (446 bytes)
RE: AMBER: Compiling / Installing Amber 8 on SUSE 10.1 hayden (Fri Jul 14 2006 - 03:27:54 PDT)
1. leap_make_file (993 bytes)
AMBER: Dynamics and Restraint problem Andrew Box (Mon Jul 17 2006 - 16:49:51 PDT)
1. DIST4 (14085 bytes)
2. md5.out (41286 bytes)
3. RST2_old (50411 bytes)
4. RST2 (46923 bytes)
5. b2.pdb (31680 bytes)
6. AMBER3 (13668 bytes)
Re: AMBER: PMEMD with NMR restraint and position restraint Ting Wang (Tue Jul 18 2006 - 13:12:41 PDT)
1. mdWA_rst_fix.in (545 bytes)
AMBER: difficulties with antechamber: tests dont even run frustrated modeller (Wed Jul 19 2006 - 16:06:36 PDT)
1. config.h (3542 bytes)
AMBER: Fwd: difficulties with antechamber: tests dont even run frustrated modeller (Wed Jul 19 2006 - 16:30:07 PDT)
1. config.h (3542 bytes)
2. IPC.1.pdb (8475 bytes)
Re: AMBER: process_mdout.perl's output is empty Alik Widge (Tue Jul 25 2006 - 08:19:44 PDT)
1. minimization-out.pl (2589 bytes)
2. imin5-out.pl (2734 bytes)