Re: AMBER: Creating an Intercalation site

From: Bill Ross <>
Date: Mon, 17 Jul 2006 12:49:20 -0700 (PDT)

> Can someone please suggest to me the best software / method in going
> about creating an intercalation site... for example intercalalting
> RNA/DNA with a small molecule?

I believe there's an older paper on ethidium intercalation by
Lybrand that gives backbone torsion angles. It is tedious but
doable to apply these in a molecule editor. It might be possible
and easier to apply them as restraints.

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Received on Wed Jul 19 2006 - 06:07:08 PDT
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