> The problem is that at the stage where I type in the saveamberparm command,
> I still get this error message
>
> FATAL: Atom .R<THY 188>.A<H73 32> does not have a type
>
> for all the atoms. Any suggestions would be appreciated. Thanks for all
> the help so far.
Watch for warnings when loading pdb. In this case you need to
understand amber residue naming.. for the current amber ff
THY is not a residue, T or DT is, and it should include the
phosphate.
Bill
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jul 19 2006 - 06:07:08 PDT
