Dear all,
I wanted to estimate binding free energy for my protein-DNA system. It
seems that the MM-PBSA program under Amber can do that. But the trajectory
and other files I have are from NAMD (Charmm format). So I am wondering
can MM-PBSA still work in this case? If not, is there any other program or
method can estimate the protein-DNA binding free energy?
Thanks a lot!
Best,
Jeny
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Received on Fri Aug 20 2004 - 02:53:01 PDT
