Re: AMBER: Pseudouridine force field parameters

From: David A. Case <>
Date: Sat, 29 Nov 2003 16:48:59 -0800

On Sat, Nov 29, 2003, Peter Gannett wrote:
> Does anyone have a set of force field parameters for psuedouridine? Or,
> can someone point me to where I might find them? I admit I have not
> searched long and hard but a cursory search did not turn up much useful.

Go to, then to the "contributed parameters" link.
There you will find "modified bases that appear in tRNA-phe", which has
a "PSU" (pseudouridine) residue.

...good luck...dac

David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |
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Received on Wed Jan 14 2004 - 15:53:02 PST
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