Hi there:
I want to pull one ligand out of a protein. At first, I use Target MD
in amber7. It seems that it doesn't work well. For example, it is much
slower than a common MD simulation. And I couldn't use this method to do
simulation in solution. So now, I want to use PMF (potential of Mean
Force) method. Do you have any recommendation of good reference papers
about such kind of simulation done by using amber?
Best,
Lishan
--
Lishan Yao <yaolisha.pilot.msu.edu>
MSU
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Thu Jul 24 2003 - 20:53:01 PDT
