Re: AMBER: Non-standard Residue

From: David A. Case <>
Date: Tue, 22 Jul 2003 14:06:50 -0700

On Tue, Jul 22, 2003, Ran Ye wrote:

> cobre07 9% antechamber -fi pdb -fo gzmat -i
> 1CAG-am.pdb -o 1CAG-am.gau
> Unrecognized atomic name , exitBus error (core dumped)

We need to see what is in the 1CAG-am.pdb file. Antechamber is not all that
robust in handling bad input, but somehow it thinks you have a blank atom could look at your pdb file to see if anything is funny; otherwise
you will have to post it.


David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |
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Received on Tue Jul 22 2003 - 22:53:01 PDT
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