AMBER: Non-standard Residue

From: Ran Ye <>
Date: Tue, 22 Jul 2003 12:34:06 -0700 (PDT)

Hi AMBER users:

I'm a newbie on AMBER and I'm trying to do some MD
calculations using AMBER. The problem is, I couldn't
get my 27 hydroxyproline residues in the protein
structure recognized by AMBER. So I figured probably I
had to use antechamber, but here is the result of
cobre07 9% antechamber -fi pdb -fo gzmat -i
1CAG-am.pdb -o 1CAG-am.gau

 Unrecognized atomic name , exitBus error (core

Could anybody give me some idea how to deal with HYP
residues in the protein? Appreciated!


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Received on Tue Jul 22 2003 - 20:53:02 PDT
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