carnal output trajectory

From: Vlad Cojocaru <>
Date: Wed 30 Oct 2002 14:25:36 +0100

Dear Amber users,
  I found out that OUTPUT COORD option in carnal has an option BOX which
is not written in the manual.
  With this option I managed to output trajectories in a proper way for
visualizing them with VMD.
  Now the question is that I want to see the trajectory after fitting
all the structures to the first frame.
  The BOX option seems not to work anymore when I give to carnal the
   GROUP g1 (RES 1-17);
   IMAGE img g1%cmass;
   RMS fit1 FIT g1;
   COORD crd fit1 BOX;
The program gives an error message that tells me that the BOX option
does not work with fit. If I do not use the BOX option the trajectories
are again impossible to visualize with VMD.
 Does anyone have any suggestions about this??
Thanks a lot!

Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
Received on Wed Oct 30 2002 - 05:25:36 PST
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