carnal output trajectory

From: Vlad Cojocaru <Vlad.Cojocaru_at_mpi-bpc.mpg.de>
Date: Thu 24 Oct 2002 22:07:35 +0200

Dear AMBER and VMD users,
   I am trying to visualize a AMBER trajectory made with carnal using vmd
If I take each trajectory and unzip as it was row created by AMBER
everything is fine but if I load into vmd the trajectory outputed by
carnal it loads something really strange. Could somebody tell why this
behaviour?
The input files for CARNAL are:


FILES_IN
   PARM p1 ../../rna_ion_wat.top;
   STREAM s1 ../../rna_ion_wat_mdeq_final.mdcrd.gz;
FILES_OUT
   COORD crd movie.mdcrd;
DECLARE
   GROUP g1 (RES 1-17);
   IMAGE img g1%cmass;
OUTPUT
   COORD crd s1 MOD 10;
END

and:

FILES_IN
   PARM p1 ../../rna_ion_wat.top;
   STREAM s1 ../../rna_ion_wat_mdprd00.mdcrd.gz
         ../../rna_ion_wat_mdprd01.mdcrd.gz
         ../../rna_ion_wat_mdprd02.mdcrd.gz
         ../../rna_ion_wat_mdprd03.mdcrd.gz
         ../../rna_ion_wat_mdprd04.mdcrd.gz
         ../../rna_ion_wat_mdprd05.mdcrd.gz
         ../../rna_ion_wat_mdprd06.mdcrd.gz;
FILES_OUT
   COORD crd movie.mdcrd APPEND;
DECLARE
   GROUP g1 (RES 1-17);
   IMAGE img g1%cmass;
OUTPUT
   COORD crd s1 MOD 50;
END

Is there another way to select certain frames from a suite of
trajectories???
Thanks a lot for any replies!
Best wishes,
vlad


-- 
Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de  
Received on Thu Oct 24 2002 - 13:07:35 PDT
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