Dear AMBER and VMD users,
I am trying to visualize a AMBER trajectory made with carnal using vmd
If I take each trajectory and unzip as it was row created by AMBER
everything is fine but if I load into vmd the trajectory outputed by
carnal it loads something really strange. Could somebody tell why this
behaviour?
The input files for CARNAL are:
FILES_IN
PARM p1 ../../rna_ion_wat.top;
STREAM s1 ../../rna_ion_wat_mdeq_final.mdcrd.gz;
FILES_OUT
COORD crd movie.mdcrd;
DECLARE
GROUP g1 (RES 1-17);
IMAGE img g1%cmass;
OUTPUT
COORD crd s1 MOD 10;
END
and:
FILES_IN
PARM p1 ../../rna_ion_wat.top;
STREAM s1 ../../rna_ion_wat_mdprd00.mdcrd.gz
../../rna_ion_wat_mdprd01.mdcrd.gz
../../rna_ion_wat_mdprd02.mdcrd.gz
../../rna_ion_wat_mdprd03.mdcrd.gz
../../rna_ion_wat_mdprd04.mdcrd.gz
../../rna_ion_wat_mdprd05.mdcrd.gz
../../rna_ion_wat_mdprd06.mdcrd.gz;
FILES_OUT
COORD crd movie.mdcrd APPEND;
DECLARE
GROUP g1 (RES 1-17);
IMAGE img g1%cmass;
OUTPUT
COORD crd s1 MOD 50;
END
Is there another way to select certain frames from a suite of
trajectories???
Thanks a lot for any replies!
Best wishes,
vlad
--
Vlad Cojocaru
Max Planck Institut for Biophysical Chemistry
Deparment: 060
Am Fassberg 11, 37077 Goettingen, Germany
tel: ++49-551-201.1389
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
Received on Thu Oct 24 2002 - 13:07:35 PDT
