We are doing some docking studies. Is there a common method for
minimizing the
protein structures. In my case the structures of proteins after
minimization,
seem to deviate from the original structure. Please assist.
Sophia
From hornak_at_csb.sunysb.edu 03 Sep 2002 12:12:22 -0400
Message-id: <1031069542.27544.45.camel.frodo.bio.sunysb.edu>
Date: 03 Sep 2002 12:12:22 -0400
From: Viktor Hornak <hornak_at_csb.sunysb.edu>
To: AMBER list <amber.heimdal.compchem.ucsf.edu>
Subject: Re: compile Moil-View, GL header files
In-Reply-to: <Pine.SGI.4.05.10209031110180.322838-100000.dirac.bri.nrc.ca>
This message usually appears if you don't load 'Irix6.5 Development
Libraries CD' and _all_ overlay CDs from 6.5.13m together. Irix6.5 base
libraries then complain about not being compatible with your 6.5.13m
core...
Hope this helps,
-Viktor
On Tue, 2002-09-03 at 11:20, Jianhui Wu wrote:
> Dear Amber Users,
>
> I try to recompile Moil-View 10.1 in SGI O2 irix 6.5.13m.
> It need Fortran GL header files. The problem is that
> when I try to install it from the 'Irix6.5 Development Libraries CD,
>
> gl_dev ------ gl_dev.sw.fortran, which contain /usr/include/fdevice.h,
> fgl.h, fsphere.h .....
>
> I got the error message:
>
> "gl_dev.sw.fortran (1274627335) is incompatible with eoe.sw.base
> (1277459330)"
>
>
> Any workaround? I am trying to copy the files into another directory but
> this is CD image file and I can not have access to the individule files.
>
>
> Thanks for your help,
>
>
> Jian Hui
>
--
===================================================================
Viktor Hornak
Center for Structural Biology Phone: (631)632-1439
SUNY at Stony Brook Fax: (631)632-1555
Stony Brook, NY 11794-5115 E-mail: viktor.hornak_at_sunysb.edu
===================================================================
Received on Tue Sep 03 2002 - 09:01:35 PDT
