Thanks for all the suggestions. MOILview did get the correct bond info
from the AMBER topology file.
Prabal
On Fri, 12 Apr 2002, Bill Ross wrote:
> > Ok, I understand that ambpdb and ptraj dont genertae
> > CONECT records, but then how do I see my sander
> > minimized/dynamics structure with the
> > modified/edited bond
>
> Modify ambpdb or ptraj (or carnal) to add CONECT
> records. Or perhaps MOILview can get bond info from
> prmtop - it wouldn't surprise me.
>
> Bill Ross
>
> __________________________________________________
> Do You Yahoo!?
> Yahoo! Tax Center - online filing with TurboTax
> http://taxes.yahoo.com/
>
--
------------------------------------------------------------------------
Prabal K Maiti Email:maiti_at_wag.caltech.edu
Beckman Institute (139-74) pkmaiti_at_yahoo.com
California Institute of Technology Tel:626-395-8151 (O)
400 South Wilson Avenue :626-744-1363 (H)
Pasadena, CA 91125 Fax:626-585-0918
Home add: 110 S. Michigan Ave.
http://www.wag.caltech.edu/home/maiti Apt # 19, Pasadena, CA 91106
------------------------------------------------------------------------
Received on Mon Apr 15 2002 - 22:48:00 PDT
