(no subject)

From: Mark Hsieh <hsieh_at_abmaxis.com>
Date: Wed 10 Apr 2002 13:31:50 -0700

I'm trying to run the tutorials for amber7 but cannot get the
dynamics to run for the DNA example with explicit solvents:


Specifically, I run

sander -O -i min_ntr.in \
          -o min_ntr.out \
          -c parm.inpcrd \
          -p parm.prmtop \
          -r min_ntr.restrt \
          -ref parm.inpcrd

with "polyAT.inpcrd" and "polyAT.prmtop" from earlier steps substituted
in for "parm.inpcrd" and "parm.prmtop".

I get the error message:

namelist read: variable not in namelist
apparent state: unit 5 named md_ntr.in
last format: list io
lately reading sequential formatted external IO

Is there a mismatch between the namelist and the variables in md_ntr.in?

How can I fix this so that I can continue with the tutorial?

Thank you,
Mark Hsieh
Received on Wed Apr 10 2002 - 13:31:50 PDT
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