Re: Compilation of AMBER 6.0 on Origin 2000

From: Marios Philippopoulos <>
Date: Thu 10 Feb 2000 12:51:07 -0500

Just before your e-mail I used


and then retried

    cd interface/source; make install
    cd interface; ./install_ambint

and it seems to have worked. Thanks for your help.

However, I am having another problem when I do

cd ../test; make test.sander_classic

Here is the last few lines of output:

NMODE: find normal modes
diffing with vibs.out

NMODE: find Langevin modes
diffing with lvibs.out
diffing with lmode.head

        cd ../test; make test.sander_classic
        cd prowat; ./Run.plast
diffing with mdout
possible FAILURE: check mdout.dif
        cd dhfr; ./Run.dhfr.classic
  Program error
*** Error code 1 (bu21)
*** Error code 1 (bu21)

All tests checked out fine except for test.sander_classic.
Any ideas on what the problem may be?


Marios Philippopoulos wrote:

> >Origin 2000 machine. In the .bashrc file I had declared:
> >
> >set AMBERHOME=/home/mphilip/progs/amber/amber6
> >export AMBERHOME
> try condensing this into:
> export AMBERHOME=/home/mphilip/progs/amber/amber6
> let me know if that works

Marios Philippopoulos, PhD
Structural Biology and Biochemistry Programme
Hospital for Sick Children
555 University Avenue
Toronto Ontario Canada M5G 1X8
Received on Thu Feb 10 2000 - 09:51:07 PST
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