Amber Archive Jul 2026: by thread

[AMBER] Triple bond FyD via AMBER (Wed Jul 01 2026 - 01:01:15 PDT)
- Re: [AMBER] Triple bond David A Case via AMBER (Tue Jul 07 2026 - 07:03:01 PDT)
  - Re: [AMBER] Triple bond FyD via AMBER (Wed Jul 08 2026 - 22:24:06 PDT)
[AMBER] Amber website down? Beierlein, Frank via AMBER (Wed Jul 01 2026 - 07:41:59 PDT)
- Re: [AMBER] Amber website down? David Case via AMBER (Wed Jul 01 2026 - 08:44:40 PDT)
[AMBER] Parameters for non-standard lipids (SLPC, SAPI, OSM) Ben Franey via AMBER (Thu Jul 02 2026 - 05:49:05 PDT)
[AMBER] Possible problems with GaMD calculations in pmemd26 (of length = 513Failed an illegal memory access was encountered) Semen Baldin via AMBER (Sat Jul 04 2026 - 03:33:05 PDT)
- Re: [AMBER] Possible problems with GaMD calculations in pmemd26 (of length = 513Failed an illegal memory access was encountered) Stéphane Téletchéa via AMBER (Mon Jul 06 2026 - 15:01:13 PDT)
[AMBER] ff99SB, ff14SB, ff19SB: which is better for protein-drug complexes? Hòa Lê via AMBER (Sat Jul 04 2026 - 20:16:10 PDT)
- Re: [AMBER] ff99SB, ff14SB, ff19SB: which is better for protein-drug complexes? Hòa Lê via AMBER (Mon Jul 06 2026 - 18:55:02 PDT)
- Re: [AMBER] ff99SB, ff14SB, ff19SB: which is better for protein-drug complexes? Hòa Lê via AMBER (Sun Jul 12 2026 - 04:36:38 PDT)
[AMBER] Request for assistance – Amber26 pmemd.cuda compilation on CHPC cluster Ahmed Elrashedy via AMBER (Mon Jul 06 2026 - 01:52:56 PDT)
[AMBER] Request for assistance – Amber26 pmemd.cuda compilation on CHPC cluster Patricio Barletta via AMBER (Mon Jul 06 2026 - 06:25:02 PDT)
[AMBER] Query about extremely large positive ΔG for protein–protein binding free energy calculation Jessica Baa via AMBER (Tue Jul 07 2026 - 05:54:31 PDT)
- Re: [AMBER] Query about extremely large positive ΔG for protein–protein binding free energy calculation David A Case via AMBER (Sat Jul 11 2026 - 07:04:41 PDT)
[AMBER] Xscore program needed Ruchika Bhat via AMBER (Wed Jul 08 2026 - 00:02:14 PDT)
[AMBER] cpptraj giving seg fault Slimak, Stephen Rudolph via AMBER (Wed Jul 08 2026 - 11:29:43 PDT)
- Re: [AMBER] cpptraj giving seg fault Daniel Roe via AMBER (Wed Jul 08 2026 - 12:11:26 PDT)
- Re: [AMBER] cpptraj giving seg fault Daniel Roe via AMBER (Thu Jul 16 2026 - 11:04:38 PDT)
[AMBER] nativecontacts using stripped trajectory Baker, Joseph via AMBER (Thu Jul 09 2026 - 19:46:03 PDT)
- Re: [AMBER] nativecontacts using stripped trajectory Daniel Roe via AMBER (Fri Jul 10 2026 - 04:29:22 PDT)
  - Re: [AMBER] nativecontacts using stripped trajectory Daniel Roe via AMBER (Tue Jul 14 2026 - 08:14:21 PDT)
[AMBER] The ideal cmake versions for amber pmemd installation. Manasa Bharath ic44158 via AMBER (Sun Jul 12 2026 - 22:57:58 PDT)
Re: [AMBER] The ideal cmake versions for amber pmemd installation. Patricio Barletta via AMBER (Mon Jul 13 2026 - 13:12:24 PDT)
[AMBER] About the Truncated Octahedron Box Mandal, Subhajyoti via AMBER (Sat Jul 18 2026 - 12:36:31 PDT)
[AMBER] pdb2pqr error in packmol-memgen [SEC=UNOFFICIAL] Morton, Craig \(H&B, Clayton\) via AMBER (Mon Jul 20 2026 - 20:08:52 PDT)
Re: [AMBER] Amber24 pmemd.cuda: illegal memory access launching kernel kNLSkinTest after successful heating Eduardo Cueto Díaz via AMBER (Thu Jul 23 2026 - 10:54:15 PDT)

Amber Archive Jul 2026 by thread