That looks like either you are mixing pmemd and ambertools folder structures, or you are not passing the PMEMD_ONLY option to cmake. Check the included run_cmake script and modify from there. Let us know if this was not the case.
Stephan Schott Verdugo
Biochemist
Computational Biophysical Chemistry
Institut für Bio- und Geowissenschaften / Bioinformatik (IBG-4)
Forschungszentrum Jülich GmbH
Wilhelm-Johnen-Straße, 52425 Jülich
Germany
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Forschungszentrum Jülich GmbH
52425 Jülich
Sitz der Gesellschaft: Jülich
Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Stefan Müller
Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende),
Dr. Stephanie Bauer (stellvertretende Vorsitzende),
Prof. Dr. Ir. Pieter Jansens, Prof. Dr. Laurens Kuipers
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El mié, 13 may 2026 a la(s) 4:52 p.m., Weatherby,Gerard via AMBER (amber.ambermd.org<mailto:amber.ambermd.org>) escribió:
The way I’m reading the install directions we compile either pmemd26_src or ambertools26. When I try to compile the pmem26_src I’m getting missing directory errors.
add_subdirectory given source "gbnsr6" which is not an existing directory.
add_subdirectory given source "cifparse" which is not an existing
add_subdirectory given source "addles" which is not an existing directory.
add_subdirectory given source "sander" which is not an existing directory.
add_subdirectory given source "nmr_aux" which is not an existing directory.
add_subdirectory given source "nmode" which is not an existing directory.
add_subdirectory given source "antechamber" which is not an existing
add_subdirectory given source "sqm" which is not an existing directory.
add_subdirectory given source "sebomd" which is not an existing directory.
add_subdirectory given source "ndiff-2.00" which is not an existing
add_subdirectory given source "gem.pmemd" which is not an existing
add_subdirectory given source "xray" which is not an existing directory.
add_subdirectory given source "cpptraj" which is not an existing directory.
add_subdirectory given source "ambpdb" which is not an existing directory.
add_subdirectory given source "pbsa" which is not an existing directory.
add_subdirectory given source "sff" which is not an existing directory.
add_subdirectory given source "rism" which is not an existing directory.
add_subdirectory given source "mdgx" which is not an existing directory.
add_subdirectory given source "xtalutil" which is not an existing
add_subdirectory given source "saxs" which is not an existing directory.
add_subdirectory given source "mm_pbsa" which is not an existing directory.
add_subdirectory given source "paramfit" which is not an existing
add_subdirectory given source "FEW" which is not an existing directory.
add_subdirectory given source "cphstats" which is not an existing
add_subdirectory given source "quick" which is not an existing directory.
add_subdirectory given source "cew" which is not an existing directory.
add_subdirectory given source "nfe-umbrella-slice" which is not an existing
add_subdirectory given source "leap" which is not an existing directory.
add_subdirectory given source "parmed" which is not an existing directory.
add_subdirectory given source "mmpbsa_py" which is not an existing
add_subdirectory given source "pymsmt" which is not an existing directory.
add_subdirectory given source "pysander" which is not an existing
add_subdirectory given source "pytraj" which is not an existing directory.
add_subdirectory given source "pdb4amber" which is not an existing
add_subdirectory given source "packmol_memgen" which is not an existing
add_subdirectory given source "PyPE_RESP" which is not an existing
add_subdirectory given source "proprep" which is not an existing directory.
add_subdirectory given source "rismtools" which is not an existing
add_subdirectory given source "moft" which is not an existing directory.
add_subdirectory given source "nabc" which is not an existing directory.
add_subdirectory given source "fe-toolkit" which is not an existing
add_subdirectory given source "examples" which is not an existing
add_subdirectory given source "benchmarks" which is not an existing
add_subdirectory given source "dat" which is not an existing directory.
These all seem to existing in the ambertools tarball. Are we supposed to extract both tarballs?
-----------------------------------
GERARD WEATHERBY
Application Architect
NMRhub
nmrhub.org<
http://nmrhub.org><
https://nmrhub.org>
[signature_1266212082]
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Forschungszentrum Jülich GmbH
52425 Jülich
Sitz der Gesellschaft: Jülich
Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Stefan Müller
Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende),
Dr. Stephanie Bauer (stellv. Vorsitzende),
Prof. Dr. Ir. Pieter Jansens, Prof. Dr. Laurens Kuipers
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Jülich GmbH
52425 Jülich
Sitz der Gesellschaft: Jülich
Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Stefan Müller
Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende),
Dr. Stephanie Bauer (stellv. Vorsitzende),
Prof. Dr. Ir. Pieter Jansens, Prof. Dr. Laurens Kuipers
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
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Received on Wed May 13 2026 - 10:00:03 PDT
