[AMBER] pmemd26 vs ambertools26

From: Weatherby,Gerard via AMBER <amber.ambermd.org>
Date: Wed, 13 May 2026 14:47:20 +0000

The way I’m reading the install directions we compile either pmemd26_src or ambertools26. When I try to compile the pmem26_src I’m getting missing directory errors.

  add_subdirectory given source "gbnsr6" which is not an existing directory.
  add_subdirectory given source "cifparse" which is not an existing
  add_subdirectory given source "addles" which is not an existing directory.
  add_subdirectory given source "sander" which is not an existing directory.
  add_subdirectory given source "nmr_aux" which is not an existing directory.
  add_subdirectory given source "nmode" which is not an existing directory.
  add_subdirectory given source "antechamber" which is not an existing
  add_subdirectory given source "sqm" which is not an existing directory.
  add_subdirectory given source "sebomd" which is not an existing directory.
  add_subdirectory given source "ndiff-2.00" which is not an existing
  add_subdirectory given source "gem.pmemd" which is not an existing
  add_subdirectory given source "xray" which is not an existing directory.
  add_subdirectory given source "cpptraj" which is not an existing directory.
  add_subdirectory given source "ambpdb" which is not an existing directory.
  add_subdirectory given source "pbsa" which is not an existing directory.
  add_subdirectory given source "sff" which is not an existing directory.
  add_subdirectory given source "rism" which is not an existing directory.
  add_subdirectory given source "mdgx" which is not an existing directory.
  add_subdirectory given source "xtalutil" which is not an existing
  add_subdirectory given source "saxs" which is not an existing directory.
  add_subdirectory given source "mm_pbsa" which is not an existing directory.
  add_subdirectory given source "paramfit" which is not an existing
  add_subdirectory given source "FEW" which is not an existing directory.
  add_subdirectory given source "cphstats" which is not an existing
  add_subdirectory given source "quick" which is not an existing directory.
  add_subdirectory given source "cew" which is not an existing directory.
  add_subdirectory given source "nfe-umbrella-slice" which is not an existing
  add_subdirectory given source "leap" which is not an existing directory.
  add_subdirectory given source "parmed" which is not an existing directory.
  add_subdirectory given source "mmpbsa_py" which is not an existing
  add_subdirectory given source "pymsmt" which is not an existing directory.
  add_subdirectory given source "pysander" which is not an existing
  add_subdirectory given source "pytraj" which is not an existing directory.
  add_subdirectory given source "pdb4amber" which is not an existing
  add_subdirectory given source "packmol_memgen" which is not an existing
  add_subdirectory given source "PyPE_RESP" which is not an existing
  add_subdirectory given source "proprep" which is not an existing directory.
  add_subdirectory given source "rismtools" which is not an existing
  add_subdirectory given source "moft" which is not an existing directory.
  add_subdirectory given source "nabc" which is not an existing directory.
  add_subdirectory given source "fe-toolkit" which is not an existing
  add_subdirectory given source "examples" which is not an existing
  add_subdirectory given source "benchmarks" which is not an existing
  add_subdirectory given source "dat" which is not an existing directory.

These all seem to existing in the ambertools tarball. Are we supposed to extract both tarballs?


-----------------------------------

GERARD WEATHERBY
Application Architect

NMRhub
nmrhub.org<https://nmrhub.org>

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Received on Wed May 13 2026 - 08:00:02 PDT
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