[AMBER] Error

From: Kapali Suri via AMBER <amber.ambermd.org>
Date: Sun, 21 Sep 2025 22:50:03 +0200

 step5_assembly.pdb
<https://drive.google.com/file/d/1w4BlgfbAdQplBvlAO4KTJfpeIB10Wr0M/view?usp=drive_web>
Respected Sir,

I have followed the same steps in
https://ambermd.org/tutorials/advanced/tutorial16/index.php.
After downloading the file at step 5, attached in the email, I used this
command

charmmlipid2amber.py* -i* step5_assembly.pdb \

 * -c*
/home/neuron3/bin/amber22_src/dat/charmmlipid2amber/charmmlipid2amber.csv \

 * -o* output_structure.pdb


But I m facing this error:


Error: Number of atoms in residue does not match number of atoms in residue
in replacement data file.


Please help me resolve this issue.


Regards

Kapali
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Received on Sun Sep 21 2025 - 14:00:04 PDT