[AMBER] atom type error in antechamber

From: 홍종희 via AMBER <amber.ambermd.org>
Date: Thu, 12 Sep 2024 18:01:46 +0900

Hi all

 

My name is Jong hui Hong

 

while I'm doing MD simulation of my protein-ligand complex with AMBER

 

I got following error in antechamber running

 

No Gasteiger parameter for atom (ID: 3, Name: B1, Type: DU)

 

It seems that the problem is because atom B is not there in predifiend atom type definition

 

Is there any other way to generate this kind of atom type manually?

 

Thanks in advance

 

Regards

 

Jong hui Hong
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Sep 12 2024 - 02:30:02 PDT
Custom Search