This part of the error message suggests that you are trying to write to a
full disk, or perhaps your allocated space is full. Maybe check to see
where the jobs are trying to write. Ask the system support staff if needed.
IPC_CREAT; errno 28:No space left on device
On Sun, Aug 11, 2024, 11:19 AM Morad Mustafa via AMBER <amber.ambermd.org>
wrote:
> Dear Amber Users,
>
> I have used both Amber 22 and Amber 24; unfortunately, after submitting my
> jobs into the
> supercomputer, most of these jobs were freezed (jobs were running but
> there was no output
> update).
> In Amber 20, this issue was not encountered.
> Kindly, does anyone know how to solve this issue?
>
> FYI: in some of these failed jobs, repeated messages were obtained in the
> slurm.err
> [LOG_CAT_BASESMUMA] Failed to shmget with IPC_PRIVATE, size 20971520,
> IPC_CREAT; errno 28:No space left on device
> [LOG_CAT_MLB] Registration of 0 network context failed. Don't use HCOLL
> [LOG_CAT_MLB] Failed to grow mlb dynamic manager
> [LOG_CAT_MLB] Payload allocation failed
> [LOG_CAT_ML] Failed to query an mlb module
> [LOG_CAT_ML] Failed to query an mlb module
> [LOG_CAT_ML] ml_discover_hierarchy exited with error
>
>
>
> Regards,
> --------------------
> Morad Mustafa
> Assistant Professor of Computational Biophysical Chemistry
> _______________________________________________
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> AMBER.ambermd.org
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>
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Received on Sun Aug 11 2024 - 15:00:02 PDT
