Dear Amber Users,
I have used both Amber 22 and Amber 24; unfortunately, after submitting my jobs into the
supercomputer, most of these jobs were freezed (jobs were running but there was no output
update).
In Amber 20, this issue was not encountered.
Kindly, does anyone know how to solve this issue?
FYI: in some of these failed jobs, repeated messages were obtained in the slurm.err
[LOG_CAT_BASESMUMA] Failed to shmget with IPC_PRIVATE, size 20971520,
IPC_CREAT; errno 28:No space left on device
[LOG_CAT_MLB] Registration of 0 network context failed. Don't use HCOLL
[LOG_CAT_MLB] Failed to grow mlb dynamic manager
[LOG_CAT_MLB] Payload allocation failed
[LOG_CAT_ML] Failed to query an mlb module
[LOG_CAT_ML] Failed to query an mlb module
[LOG_CAT_ML] ml_discover_hierarchy exited with error
Regards,
--------------------
Morad Mustafa
Assistant Professor of Computational Biophysical Chemistry
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Received on Sun Aug 11 2024 - 08:30:02 PDT
