Re: [AMBER] Docking proteins to DNA

From: James Kress via AMBER <amber.ambermd.org>
Date: Thu, 13 Jun 2024 17:28:31 -0400

Thank you David.

-----Original Message-----
From: David A Case <dacase1.gmail.com>
Sent: Thursday, June 13, 2024 10:15 AM
To: jimkress_58.kressworks.org; AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] Docking proteins to DNA

On Wed, Jun 12, 2024, James Kress via AMBER wrote:

>I am looking to find suggestions on the best application for docking
>proteins to DNA.
>
>Is AMBER alone sufficient or are other apps like npDOCK, HAADOCK, HDOCK
>better suited to this task?

Other apps are definitely needed: Amber is not designed to do docking. I
hope you will get some suggestions that concentrate on protein--DNA docking.
Be sure to look for application papers in this area, and see what was used.

....dac


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Received on Thu Jun 13 2024 - 14:30:02 PDT
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