Thank you David.
-----Original Message-----
From: David A Case <dacase1.gmail.com>
Sent: Thursday, June 13, 2024 10:15 AM
To: jimkress_58.kressworks.org; AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] Docking proteins to DNA
On Wed, Jun 12, 2024, James Kress via AMBER wrote:
>I am looking to find suggestions on the best application for docking
>proteins to DNA.
>
>Is AMBER alone sufficient or are other apps like npDOCK, HAADOCK, HDOCK
>better suited to this task?
Other apps are definitely needed: Amber is not designed to do docking. I
hope you will get some suggestions that concentrate on protein--DNA docking.
Be sure to look for application papers in this area, and see what was used.
....dac
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Received on Thu Jun 13 2024 - 14:30:02 PDT
