In addition to standard docking tools like HADDOCK, you may want to check
out some fairly new tools: AlphaFold 3 and RoseTTAFold-All-Atom.
https://blog.google/technology/ai/google-deepmind-isomorphic-alphafold-3-ai-model/
https://www.science.org/doi/10.1126/science.adl2528
Best of luck,
Cianna
On Wed, Jun 12, 2024 at 1:27 PM James Kress via AMBER <amber.ambermd.org>
wrote:
> I am looking to find suggestions on the best application for docking
> proteins to DNA.
>
> Is AMBER alone sufficient or are other apps like npDOCK, HAADOCK, HDOCK
> better suited to this task?
>
> There is a plethora of apps one can find mentioned doing a web search.
> What
> would the AMBER community suggest is a best choice?
>
> Thanks for any responses.
>
> Jim Kress
> James Kress Ph.D., President
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Received on Thu Jun 13 2024 - 08:30:02 PDT
