Re: [AMBER] (UNKNOWN ATOM TYPE: c5)

From: David A Case via AMBER <amber.ambermd.org>
Date: Sat, 16 Mar 2024 12:36:44 -0600

On Fri, Mar 15, 2024, Trevor Kramer via AMBER wrote:
>
>When loading gaff2 into tleap we see this warning messages in
>leap.log. Does this indicate an issue with our installation?
>
>> source leaprc.gaff2
>(UNKNOWN ATOM TYPE: c5)
>(UNKNOWN ATOM TYPE: c6)

If you don't see problems down the line, you are fine. Otherwise, you
can add c5 and c6 types in the "addAtomTypes" section of leaprc.gaff2.

We'll get this fixed for the next release. Thanks for the report.

....dac


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Received on Sat Mar 16 2024 - 12:00:03 PDT
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