Hi,
Try using the moveanchor keyword, which when determining fixed positions
uses the previous molecule as an anchor. It’s a bit of a hack but I’ve had
it work well with membrane systems.
-Dan
On Fri, Feb 23, 2024 at 8:08 PM Romero, Maria via AMBER <amber.ambermd.org>
wrote:
> Hello amber friends,
>
> I am currently running a membrane simulation for the first time, and I am
> having a hard time with the imaging. I am running a DOPC: DOPG membrane,
> the simulation has a drug molecule 6 Armstrong's away from the membrane
> surface and then goes through the membrane. I have tried auto imaging, I
> have tried anchoring the residue number corresponding to the the lipids ad
> nothing works my drug seems to end on the edge of the box always.
>
> Can someone offer advise on how to image my system please?
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Received on Sun Mar 10 2024 - 10:00:02 PDT
