[AMBER] Adding extra solvent molecules to a membrane-protein system

From: Bhattacharjee, Sinjini via AMBER <amber.ambermd.org>
Date: Fri, 8 Mar 2024 14:05:35 +0000

Dear Amber users,

I want to replace a single protein chain with extra TIP3P waters, in a protein-lipid-bilayer box (generated using packmol-memgen).
Can this be done using tleap without affecting the the original lipids?

Any help or suggestions will be appreciated.



Best ,


Sinjini Bhattacharjee

PhD Student
Molecular Theory and Spectroscopy
Max-Planck-Institut für Kohlenforschung
45470 Mülheim an der Ruhr, Germany

email: bhattacharjee.kofo.mpg.de<mailto:bhattacharjee.kofo.mpg.de>
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Received on Fri Mar 08 2024 - 06:30:02 PST
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