[AMBER] Fwd: dev/shm memory errors in Amber 22

From: Waqqas Zia via AMBER <amber.ambermd.org>
Date: Mon, 12 Feb 2024 14:14:10 +0400

Hi Team,

Sharing this again if someone can help.

Thank you

---------- Forwarded message ---------
From: Waqqas Zia <wz22.nyu.edu>
Date: Thu, Feb 8, 2024 at 2:56 PM
Subject: dev/shm memory errors in Amber 22
To: <amber.ambermd.org>


Dear Team,

I hope this message finds you well.

We have encountered memory errors related to /dev/shm in Amber 22, which
were not previously experienced with earlier versions. Our HPC centers have
limited memory available in `/dev/shm`, leading to operational issues.

Is there an alternative configuration or environment variable that can be
set to utilize a different directory, such as $TMPDIR?

We look forward to your guidance and assistance on this matter.

Best,

-- 
*Waqqas Zia*
HPC Applications Specialist
Web:Center for Research Computing
<https://nyuad.nyu.edu/en/research/facilities-and-support/center-for-research-computing.html>
Wiki:https://crc-docs.abudhabi.nyu.edu/
NYU Abu Dhabi <https://nyuad.nyu.edu/en/>
UAE O: +971 2 628 5354
-- 
*Waqqas Zia*
HPC Applications Specialist
Web:Center for Research Computing
<https://nyuad.nyu.edu/en/research/facilities-and-support/center-for-research-computing.html>
Wiki:https://crc-docs.abudhabi.nyu.edu/
NYU Abu Dhabi <https://nyuad.nyu.edu/en/>
UAE O: +971 2 628 5354
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Received on Mon Feb 12 2024 - 02:30:02 PST