On Sat, Sep 30, 2023, Fadaei Fatemeh Mgr. via AMBER wrote:
>
> "Atom P in residue DA1 was not found in rtp entry DA5 with 30 atoms while sorting atoms."
The default in Amber is that 5' nucleotides do not have a phosphate group
(since this is quite common with synthetic samples). If you want a
phosphate group, load terminal_monophosphate.lib after you load the regular
RNA or DNA libraries -- this will change the defaults.
...hope this helps....dac
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Received on Mon Oct 02 2023 - 10:30:02 PDT
