[AMBER] Alternatives to NAB for building DNA

From: Claire Harmange Magnani via AMBER <amber.ambermd.org>
Date: Wed, 20 Sep 2023 19:14:24 -0400

Dear AMBER users,

I learned through this listserv that nab is no longer a part of AmberTools.
Other than attempting to download an older version of Ambertools, what
other options do I have to build and modify DNA structures so that they
will be compatible with Amber?
I had hoped to familiarize myself with Amber by following this tutorial
<https://ambermd.org/tutorials/basic/tutorial1/> and this one
<https://bionano.physics.illinois.edu/sites/default/files/x3dnatutorial_0.pdf>.
Are there other similar tutorials out there that don't use nab?

Thanks,

Claire

-- 
Claire Harmange Magnani, Ph.D.
Jane Coffin Child Postdoctoral Fellow
Broad Institute of MIT and Harvard
415 Main Street, Cambridge, MA 02142
cmagnani.broadinstitute.org
[image: BroadInstLogoforDigitalRGB.png] <https://www.broadinstitute.org/>
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Received on Wed Sep 20 2023 - 16:30:02 PDT