[AMBER] Compare trajectories

From: yunshi11 via AMBER <amber.ambermd.org>
Date: Tue, 18 Jul 2023 16:06:15 +1000

Hi all,

I am trying to compare traj1.nc vs traj2.nc. They have the same topology in
xyz.prmtop.

Using rms2d, how to generate a 2d rms comparison?

I tried the following in cpptraj but it gave me a comparison of traj1.nc vs
traj1.nc instead:

parm xyz.prmtop
loadcrd traj2.nc
trajin traj1.nc
rms2d .CA out test2drms.gnu reftraj traj1.nc

Thanks,
Yun
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Received on Mon Jul 17 2023 - 23:30:03 PDT
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